Nanopore amplicon data analysis

Introduction

Welcome to the Nanopore amplicon analysis manual. This manual contains a step by step guide for performing quality control, generating a consensus and comparing sequences to reference sequences. In the final chapter of the manual we will show how to automate all of these steps into a single pipeline for speed and convenience.

Tip

If you are just interested in running the automated workflow, then you only have to check out the chapters ‘Preparation’ and ‘Automating data analysis’.